kgx
latest
  • Installation
    • Installation for users
      • Installing from PyPI
      • Installing from GitHub
    • Installation for developers
      • Setting up a development environment
      • Setting up a testing environment
  • Reference
    • KGX Command Line Interface
      • KGX CLI
        • kgx
          • graph-summary
          • merge
          • neo4j-download
          • neo4j-upload
          • transform
          • validate
      • CLI Utils
        • kgx.cli.cli_utils
    • Graph
      • kgx.graph.base_graph.BaseGraph
      • kgx.graph.nx_graph.NxGraph
    • Transformer
      • Inspecting the Knowledge Data Flow
      • Provenance of Nodes and Edges
      • InfoRes Identifier Rewriting
      • kgx.transformer
    • Source
      • kgx.source.source
      • kgx.source.graph_source
      • kgx.source.tsv_source
      • kgx.source.json_source
      • kgx.source.jsonl_source
      • kgx.source.trapi_source
      • kgx.source.obograph_source
      • kgx.source.sssom_source
      • kgx.source.neo_source
      • kgx.source.rdf_source
      • kgx.source.owl_source
      • kgx.source.sparql_source
    • Sink
      • __init__ method
      • write_nodes method
      • write_edges method
      • finalize method
      • kgx.sink.sink
      • kgx.sink.graph_sink
      • kgx.sink.tsv_sink
      • kgx.sink.json_sink
      • kgx.sink.jsonl_sink
      • kgx.sink.trapi_sink
      • kgx.sink.neo_sink
      • kgx.sink.rdf_sink
    • Validator
      • Streaming Data Processing Mode
      • Biolink Model Versioning
      • kgx.validator
    • Graph Operations
      • Clique Merge
        • kgx.graph_operations.clique_merge
      • Graph Merge
        • kgx.graph_operations.graph_merge
      • Summarize Graph
        • Streaming Data Processing Mode
        • kgx.graph_operations.summarize_graph
      • Remap Node Identifier
        • kgx.graph_operations.remap_node_identifier
      • Remap Node Property
        • kgx.graph_operations.remap_node_property
      • Remap Edge Property
        • kgx.graph_operations.remap_edge_property
      • Fold Predicate
        • kgx.graph_operations.fold_predicate
      • Unfold Node Property
        • kgx.graph_operations.unfold_node_property
      • Remove Singleton Nodes
        • kgx.graph_operations.remove_singleton_nodes
    • Utilities
      • KGX Utils
        • kgx.utils.kgx_utils
      • Graph Utils
        • kgx.utils.graph_utils
      • RDF Utils
        • kgx.utils.rdf_utils
    • Prefix Manager
      • kgx.prefix_manager
    • CURIE Lookup Service
      • kgx.curie_lookup_service
  • KGX Format
  • Examples
    • Using KGX as a module
    • Using KGX CLI
      • graph-summary
      • validate
      • neo4j-download
      • neo4j-upload
      • transform
      • merge
kgx
  • Docs »
  • Overview: module code

All modules for which code is available

  • kgx.cli.cli_utils
  • kgx.curie_lookup_service
  • kgx.graph.base_graph
  • kgx.graph.nx_graph
  • kgx.graph_operations
    • kgx.graph_operations.clique_merge
    • kgx.graph_operations.graph_merge
    • kgx.graph_operations.meta_knowledge_graph
    • kgx.graph_operations.summarize_graph
  • kgx.prefix_manager
  • kgx.sink.graph_sink
  • kgx.sink.json_sink
  • kgx.sink.jsonl_sink
  • kgx.sink.neo_sink
  • kgx.sink.rdf_sink
  • kgx.sink.sink
  • kgx.sink.trapi_sink
  • kgx.sink.tsv_sink
  • kgx.source.graph_source
  • kgx.source.json_source
  • kgx.source.jsonl_source
  • kgx.source.neo_source
  • kgx.source.obograph_source
  • kgx.source.owl_source
  • kgx.source.rdf_source
  • kgx.source.source
  • kgx.source.sparql_source
  • kgx.source.sssom_source
  • kgx.source.trapi_source
  • kgx.source.tsv_source
  • kgx.transformer
  • kgx.utils.graph_utils
  • kgx.utils.kgx_utils
  • kgx.utils.rdf_utils
  • kgx.validator

© Copyright 2021, Chris Mungall, Deepak Unni, Kent Shefchek, Lance Hannestad, Kenneth Bruskiewicz, Richard Bruskiewich Revision 23f20f98.

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