kgx
0.2.1
Installation
Installation for users
Installation for developers
Examples
Using KGX as a module
Using KGX CLI
graph-summary
validate
neo4j-download
neo4j-upload
transform
merge
KGX Command Line Interface
Transformers
Transformer
NeoTransformer
PandasTransformer
JsonTransformer
LogicTermTransformer
NxTransformer
RdfGraphMixin
RdfTransformer
SparqlTransformer
Operations
Clique Merge
Graph Merge
Summarize Graph
Utilities
graph_utils
kgx_utils
rdf_utils
cli_utils
kgx
Docs
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Index
Edit on GitHub
Index
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B
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C
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D
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E
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F
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G
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I
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J
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K
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L
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M
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N
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O
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P
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Q
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R
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S
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T
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U
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V
A
add_all_edges() (in module kgx.operations.graph_merge)
add_all_nodes() (in module kgx.operations.graph_merge)
add_edge() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_edge_attribute() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_node() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
add_node_attribute() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
apply_edge_filters() (in module kgx.utils.kgx_utils)
apply_filters() (in module kgx.cli.cli_utils)
(in module kgx.utils.kgx_utils)
apply_node_filters() (in module kgx.utils.kgx_utils)
apply_operations() (in module kgx.cli.cli_utils)
B
build_cliques() (in module kgx.operations.clique_merge)
C
camelcase_to_sentencecase() (in module kgx.utils.kgx_utils)
categorize() (kgx.transformers.sparql_transformer.RedSparqlTransformer method)
check_all_categories() (in module kgx.operations.clique_merge)
check_categories() (in module kgx.operations.clique_merge)
check_edge_filter() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
check_node_filter() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
clique_merge() (in module kgx.operations.clique_merge)
consolidate_edges() (in module kgx.operations.clique_merge)
contract() (in module kgx.utils.kgx_utils)
count() (kgx.transformers.neo_transformer.NeoTransformer method)
create_constraint_query() (kgx.transformers.neo_transformer.NeoTransformer static method)
create_constraints() (kgx.transformers.neo_transformer.NeoTransformer method)
curie_lookup() (in module kgx.utils.graph_utils)
current_time_in_millis() (in module kgx.utils.kgx_utils)
D
dereify() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
deserialize() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
dump_to_file() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
E
elect_leader() (in module kgx.operations.clique_merge)
expand() (in module kgx.utils.kgx_utils)
export() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
export_edges() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
export_neo4j_edges() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
export_neo4j_nodes() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
export_nodes() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
F
format_biolink_category() (in module kgx.utils.kgx_utils)
G
generate_edge_identifiers() (in module kgx.utils.kgx_utils)
generate_edge_key() (in module kgx.utils.kgx_utils)
generate_graph_stats() (in module kgx.operations.summarize_graph)
generate_unwind_edge_query() (kgx.transformers.neo_transformer.NeoTransformer static method)
generate_unwind_node_query() (kgx.transformers.neo_transformer.NeoTransformer static method)
generate_uuid() (in module kgx.utils.kgx_utils)
get_all_edge_properties() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
get_all_node_properties() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
get_ancestors() (in module kgx.utils.graph_utils)
get_biolink_ancestors() (in module kgx.utils.kgx_utils)
get_biolink_association_types() (in module kgx.utils.kgx_utils)
get_biolink_edge_properties() (in module kgx.utils.kgx_utils)
get_biolink_element() (in module kgx.utils.kgx_utils)
(kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
get_biolink_mapping() (in module kgx.utils.kgx_utils)
get_biolink_node_properties() (in module kgx.utils.kgx_utils)
get_biolink_property_types() (in module kgx.utils.kgx_utils)
get_biolink_relations() (in module kgx.utils.kgx_utils)
get_cache() (in module kgx.utils.kgx_utils)
get_category() (kgx.transformers.json_transformer.ObographJsonTransformer method)
get_category_from_equivalence() (in module kgx.operations.clique_merge)
get_category_via_superclass() (in module kgx.utils.graph_utils)
get_clique_category() (in module kgx.operations.clique_merge)
get_curie_lookup_service() (in module kgx.utils.kgx_utils)
get_edge_filter() (kgx.transformers.neo_transformer.NeoTransformer method)
get_edges() (kgx.transformers.neo_transformer.NeoTransformer method)
get_facet_counts() (in module kgx.operations.summarize_graph)
get_file_types() (in module kgx.cli.cli_utils)
get_leader_by_annotation() (in module kgx.operations.clique_merge)
get_leader_by_prefix_priority() (in module kgx.operations.clique_merge)
get_leader_by_sort() (in module kgx.operations.clique_merge)
get_node_filter() (kgx.transformers.neo_transformer.NeoTransformer method)
get_nodes() (kgx.transformers.neo_transformer.NeoTransformer method)
get_pages() (kgx.transformers.neo_transformer.NeoTransformer method)
get_parents() (in module kgx.utils.graph_utils)
get_prefix_prioritization_map() (in module kgx.utils.kgx_utils)
get_toolkit() (in module kgx.utils.kgx_utils)
get_transformer() (in module kgx.cli.cli_utils)
get_type_for_property() (in module kgx.utils.kgx_utils)
graph_summary() (in module kgx.cli.cli_utils)
I
infer_category() (in module kgx.utils.rdf_utils)
is_empty() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
is_null() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
J
JsonTransformer (class in kgx.transformers.json_transformer)
K
kgx.cli.cli_utils
module
kgx.operations.clique_merge
module
kgx.operations.graph_merge
module
kgx.operations.summarize_graph
module
kgx.transformers.json_transformer
module
kgx.transformers.logicterm_transformer
module
kgx.transformers.neo_transformer
module
kgx.transformers.pandas_transformer
module
kgx.transformers.rdf_graph_mixin
module
kgx.transformers.rdf_transformer
module
kgx.transformers.sparql_transformer
module
kgx.transformers.transformer
module
kgx.utils.graph_utils
module
kgx.utils.kgx_utils
module
kgx.utils.rdf_utils
module
L
load() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
load_edge() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
load_edges() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
load_networkx_graph() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
load_node() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
load_nodes() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
LogicTermTransformer (class in kgx.transformers.logicterm_transformer)
M
merge() (in module kgx.cli.cli_utils)
merge_all_graphs() (in module kgx.operations.graph_merge)
merge_edge() (in module kgx.operations.graph_merge)
merge_graphs() (in module kgx.operations.graph_merge)
merge_node() (in module kgx.operations.graph_merge)
module
kgx.cli.cli_utils
kgx.operations.clique_merge
kgx.operations.graph_merge
kgx.operations.summarize_graph
kgx.transformers.json_transformer
kgx.transformers.logicterm_transformer
kgx.transformers.neo_transformer
kgx.transformers.pandas_transformer
kgx.transformers.rdf_graph_mixin
kgx.transformers.rdf_transformer
kgx.transformers.sparql_transformer
kgx.transformers.transformer
kgx.utils.graph_utils
kgx.utils.kgx_utils
kgx.utils.rdf_utils
MonarchSparqlTransformer (class in kgx.transformers.sparql_transformer)
N
neo4j_download() (in module kgx.cli.cli_utils)
neo4j_report() (kgx.transformers.neo_transformer.NeoTransformer method)
neo4j_upload() (in module kgx.cli.cli_utils)
NeoTransformer (class in kgx.transformers.neo_transformer)
O
ObanRdfTransformer (class in kgx.transformers.rdf_transformer)
ObographJsonTransformer (class in kgx.transformers.json_transformer)
P
PandasTransformer (class in kgx.transformers.pandas_transformer)
parse() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
parse_meta() (kgx.transformers.json_transformer.ObographJsonTransformer method)
parse_source() (in module kgx.cli.cli_utils)
parse_source_input() (in module kgx.cli.cli_utils)
prepare_data_dict() (in module kgx.utils.kgx_utils)
process_predicate() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
Q
query() (kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
R
RdfGraphMixin (class in kgx.transformers.rdf_graph_mixin)
RdfOwlTransformer (class in kgx.transformers.rdf_transformer)
RdfTransformer (class in kgx.transformers.rdf_transformer)
RedSparqlTransformer (class in kgx.transformers.sparql_transformer)
reify() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
remap_edge_property() (in module kgx.utils.graph_utils)
remap_node_identifier() (in module kgx.utils.graph_utils)
remap_node_property() (in module kgx.utils.graph_utils)
report() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
restore_from_file() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
S
sanitize_category() (kgx.transformers.neo_transformer.NeoTransformer static method)
save() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
save_edge() (kgx.transformers.neo_transformer.NeoTransformer method)
save_node() (kgx.transformers.neo_transformer.NeoTransformer method)
sentencecase_to_camelcase() (in module kgx.utils.kgx_utils)
sentencecase_to_snakecase() (in module kgx.utils.kgx_utils)
serialize() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
set_edge_filter() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
set_node_filter() (kgx.transformers.json_transformer.JsonTransformer method)
(kgx.transformers.json_transformer.ObographJsonTransformer method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer method)
(kgx.transformers.neo_transformer.NeoTransformer method)
(kgx.transformers.pandas_transformer.PandasTransformer method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
(kgx.transformers.transformer.Transformer method)
set_predicate_mapping() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
set_property_types() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
snakecase_to_sentencecase() (in module kgx.utils.kgx_utils)
sort_categories() (in module kgx.operations.clique_merge)
SparqlTransformer (class in kgx.transformers.sparql_transformer)
summarize_edges() (in module kgx.operations.summarize_graph)
summarize_graph() (in module kgx.operations.summarize_graph)
summarize_nodes() (in module kgx.operations.summarize_graph)
T
transform() (in module kgx.cli.cli_utils)
transform_source() (in module kgx.cli.cli_utils)
Transformer (class in kgx.transformers.transformer)
triple() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
U
update_edge() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
update_node() (kgx.transformers.rdf_graph_mixin.RdfGraphMixin method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer method)
(kgx.transformers.sparql_transformer.SparqlTransformer method)
update_node_categories() (in module kgx.operations.clique_merge)
uriref() (kgx.transformers.rdf_transformer.ObanRdfTransformer method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer method)
(kgx.transformers.rdf_transformer.RdfTransformer method)
V
validate() (in module kgx.cli.cli_utils)
validate_edge() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
validate_node() (kgx.transformers.json_transformer.JsonTransformer static method)
(kgx.transformers.json_transformer.ObographJsonTransformer static method)
(kgx.transformers.logicterm_transformer.LogicTermTransformer static method)
(kgx.transformers.neo_transformer.NeoTransformer static method)
(kgx.transformers.pandas_transformer.PandasTransformer static method)
(kgx.transformers.rdf_transformer.ObanRdfTransformer static method)
(kgx.transformers.rdf_transformer.RdfOwlTransformer static method)
(kgx.transformers.rdf_transformer.RdfTransformer static method)
(kgx.transformers.sparql_transformer.MonarchSparqlTransformer static method)
(kgx.transformers.sparql_transformer.RedSparqlTransformer static method)
(kgx.transformers.sparql_transformer.SparqlTransformer static method)
(kgx.transformers.transformer.Transformer static method)
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